PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 114aa    MW: 12738.3 Da    PI: 4.9871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-173995162
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFs 62
                    + pGfrF Ptdeel+++yLkkkveg++  + evi+ev+i k+ePwdLp     +++ +y  +
  XP_016515300.1 39 MFPGFRFCPTDEELISYYLKKKVEGSDKCV-EVISEVEIWKHEPWDLPG----RSNGCYILA 95
                    579************************777.99**************93....334555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-183590IPR003441NAC domain
PROSITE profilePS5100519.09239114IPR003441NAC domain
PfamPF023656.2E-94198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEDGNVSDEN KATKIVERSK NINGNDKNVE ISVATASTMF PGFRFCPTDE ELISYYLKKK  60
VEGSDKCVEV ISEVEIWKHE PWDLPGRSNG CYILAKKIVG NVSREGEKST HGVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754505e-67HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBankHG9755235e-67HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515300.11e-79PREDICTED: NAC domain-containing protein 40-like
SwissprotQ9XIN72e-20NAC40_ARATH; NAC domain-containing protein 40
TrEMBLM1BQC71e-38M1BQC7_SOLTU; Uncharacterized protein
TrEMBLM1BQC91e-38M1BQC9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000504823e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41542243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-21NTM1-like 8